Information about Samples:
Sample_titleWs_leaf_0mM NaCl_rep1Ws_leaf_0mM NaCl_rep2Ws_leaf_100mM NaCl_rep1Ws_leaf_100mM NaCl_rep2Col_leaf_0mM NaCl_rep1Col_leaf_0mM NaCl_rep2Col_leaf_100mM NaCl_rep1Col_leaf_100mM NaCl_rep2Col(gl)_leaf_0mM NaCl_rep1Col(gl)_leaf_0mM NaCl_rep2Col(gl)_leaf_100mM NaCl_rep1Col(gl)_leaf_100mM NaCl_rep2
Sample_geo_accessionGSM420232GSM420233GSM420234GSM420235GSM420236GSM420237GSM420238GSM420239GSM420240GSM420241GSM420242GSM420243
Sample_typeRNARNARNARNARNARNARNARNARNARNARNARNA
Sample_channel_count111111111111
Sample_source_name_ch1Ws plant, 0mM NaCl, 6 dWs plant, 0mM NaCl, 6 dWs plant, 100mM NaCl, 6 dWs plant, 100mM NaCl, 6 dCol plant, 0mM NaCl, 6 dCol plant, 0mM NaCl, 6 dCol plant, 100mM NaCl, 6 dCol plant, 100mM NaCl, 6 dCol(gl) plant, 0mM NaCl, 6 dCol(gl) plant, 0mM NaCl, 6 dCol(gl) plant, 100mM NaCl, 6 dCol(gl) plant, 100mM NaCl, 6 d
Sample_organism_ch1Arabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thaliana
Sample_characteristics_ch1tissue: leaftissue: leaftissue: leaftissue: leaftissue: leaftissue: leaftissue: leaftissue: leaftissue: leaftissue: leaftissue: leaftissue: leaf
Sample_characteristics_ch1genotype: Wsgenotype: Wsgenotype: Wsgenotype: Wsgenotype: Colgenotype: Colgenotype: Colgenotype: Colgenotype: Col(gl)genotype: Col(gl)genotype: Col(gl)genotype: Col(gl)
Sample_characteristics_ch1age: 20 days after sowingage: 20 days after sowingage: 20 days after sowingage: 20 days after sowingage: 20 days after sowingage: 20 days after sowingage: 20 days after sowingage: 20 days after sowingage: 20 days after sowingage: 20 days after sowingage: 20 days after sowingage: 20 days after sowing
Sample_treatment_protocol_ch1Plants subjected to salt stress were watered with NaCl solution which was dissolved in ½ Strength Hoagland Solution. Salt treatment started at 14 DAS . Plants were watered from below to field capacity and then sprayed with the same concentration of NaCl solution from the top, ensuring adequate leaching and preventing excess salinity. The concentrations of NaCl supplementation were increased stepwise by 50 mM every 2 days for each line, to the indicated maximum (0, 100 mM). Plants were then watered every 2 days with or without NaCl at the indicated concentrations. The flats were rotated in the growth chamber everyday to minimize the effect of growth condition.Plants subjected to salt stress were watered with NaCl solution which was dissolved in ½ Strength Hoagland Solution. Salt treatment started at 14 DAS . Plants were watered from below to field capacity and then sprayed with the same concentration of NaCl solution from the top, ensuring adequate leaching and preventing excess salinity. The concentrations of NaCl supplementation were increased stepwise by 50 mM every 2 days for each line, to the indicated maximum (0, 100 mM). Plants were then watered every 2 days with or without NaCl at the indicated concentrations. The flats were rotated in the growth chamber everyday to minimize the effect of growth condition.Plants subjected to salt stress were watered with NaCl solution which was dissolved in ½ Strength Hoagland Solution. Salt treatment started at 14 DAS . Plants were watered from below to field capacity and then sprayed with the same concentration of NaCl solution from the top, ensuring adequate leaching and preventing excess salinity. The concentrations of NaCl supplementation were increased stepwise by 50 mM every 2 days for each line, to the indicated maximum (0, 100 mM). Plants were then watered every 2 days with or without NaCl at the indicated concentrations. The flats were rotated in the growth chamber everyday to minimize the effect of growth condition.Plants subjected to salt stress were watered with NaCl solution which was dissolved in ½ Strength Hoagland Solution. Salt treatment started at 14 DAS . Plants were watered from below to field capacity and then sprayed with the same concentration of NaCl solution from the top, ensuring adequate leaching and preventing excess salinity. The concentrations of NaCl supplementation were increased stepwise by 50 mM every 2 days for each line, to the indicated maximum (0, 100 mM). Plants were then watered every 2 days with or without NaCl at the indicated concentrations. The flats were rotated in the growth chamber everyday to minimize the effect of growth condition.Plants subjected to salt stress were watered with NaCl solution which was dissolved in ½ Strength Hoagland Solution. Salt treatment started at 14 DAS . Plants were watered from below to field capacity and then sprayed with the same concentration of NaCl solution from the top, ensuring adequate leaching and preventing excess salinity. The concentrations of NaCl supplementation were increased stepwise by 50 mM every 2 days for each line, to the indicated maximum (0, 100 mM). Plants were then watered every 2 days with or without NaCl at the indicated concentrations. The flats were rotated in the growth chamber everyday to minimize the effect of growth condition.Plants subjected to salt stress were watered with NaCl solution which was dissolved in ½ Strength Hoagland Solution. Salt treatment started at 14 DAS . Plants were watered from below to field capacity and then sprayed with the same concentration of NaCl solution from the top, ensuring adequate leaching and preventing excess salinity. The concentrations of NaCl supplementation were increased stepwise by 50 mM every 2 days for each line, to the indicated maximum (0, 100 mM). Plants were then watered every 2 days with or without NaCl at the indicated concentrations. The flats were rotated in the growth chamber everyday to minimize the effect of growth condition.Plants subjected to salt stress were watered with NaCl solution which was dissolved in ½ Strength Hoagland Solution. Salt treatment started at 14 DAS . Plants were watered from below to field capacity and then sprayed with the same concentration of NaCl solution from the top, ensuring adequate leaching and preventing excess salinity. The concentrations of NaCl supplementation were increased stepwise by 50 mM every 2 days for each line, to the indicated maximum (0, 100 mM). Plants were then watered every 2 days with or without NaCl at the indicated concentrations. The flats were rotated in the growth chamber everyday to minimize the effect of growth condition.Plants subjected to salt stress were watered with NaCl solution which was dissolved in ½ Strength Hoagland Solution. Salt treatment started at 14 DAS . Plants were watered from below to field capacity and then sprayed with the same concentration of NaCl solution from the top, ensuring adequate leaching and preventing excess salinity. The concentrations of NaCl supplementation were increased stepwise by 50 mM every 2 days for each line, to the indicated maximum (0, 100 mM). Plants were then watered every 2 days with or without NaCl at the indicated concentrations. The flats were rotated in the growth chamber everyday to minimize the effect of growth condition.Plants subjected to salt stress were watered with NaCl solution which was dissolved in ½ Strength Hoagland Solution. Salt treatment started at 14 DAS . Plants were watered from below to field capacity and then sprayed with the same concentration of NaCl solution from the top, ensuring adequate leaching and preventing excess salinity. The concentrations of NaCl supplementation were increased stepwise by 50 mM every 2 days for each line, to the indicated maximum (0, 100 mM). Plants were then watered every 2 days with or without NaCl at the indicated concentrations. The flats were rotated in the growth chamber everyday to minimize the effect of growth condition.Plants subjected to salt stress were watered with NaCl solution which was dissolved in ½ Strength Hoagland Solution. Salt treatment started at 14 DAS . Plants were watered from below to field capacity and then sprayed with the same concentration of NaCl solution from the top, ensuring adequate leaching and preventing excess salinity. The concentrations of NaCl supplementation were increased stepwise by 50 mM every 2 days for each line, to the indicated maximum (0, 100 mM). Plants were then watered every 2 days with or without NaCl at the indicated concentrations. The flats were rotated in the growth chamber everyday to minimize the effect of growth condition.Plants subjected to salt stress were watered with NaCl solution which was dissolved in ½ Strength Hoagland Solution. Salt treatment started at 14 DAS . Plants were watered from below to field capacity and then sprayed with the same concentration of NaCl solution from the top, ensuring adequate leaching and preventing excess salinity. The concentrations of NaCl supplementation were increased stepwise by 50 mM every 2 days for each line, to the indicated maximum (0, 100 mM). Plants were then watered every 2 days with or without NaCl at the indicated concentrations. The flats were rotated in the growth chamber everyday to minimize the effect of growth condition.Plants subjected to salt stress were watered with NaCl solution which was dissolved in ½ Strength Hoagland Solution. Salt treatment started at 14 DAS . Plants were watered from below to field capacity and then sprayed with the same concentration of NaCl solution from the top, ensuring adequate leaching and preventing excess salinity. The concentrations of NaCl supplementation were increased stepwise by 50 mM every 2 days for each line, to the indicated maximum (0, 100 mM). Plants were then watered every 2 days with or without NaCl at the indicated concentrations. The flats were rotated in the growth chamber everyday to minimize the effect of growth condition.
Sample_growth_protocol_ch1Seeds were sown directly on soil in 26 × 26 × 6 cm flat pot filled with standard planting medium (Baccto, Houston, TX, USA). Each flat pot was divided into 36 subsections and 5 seeds were pipetted onto wet soil surface carefully in each subsection. The pots were covered with a transparent plastic cover and plants were grown at 23/18 °C in the growth chamber with a 10h light/14h dark cycle at 350 μmol m-2s-1 and 70% relative humidity. Half Strength Hoagland Solution was applied and watered from below once per week before the beginning of the salt treatment. At 14 DAS, the flats were thinned to 1 seedling per subsection.Seeds were sown directly on soil in 26 × 26 × 6 cm flat pot filled with standard planting medium (Baccto, Houston, TX, USA). Each flat pot was divided into 36 subsections and 5 seeds were pipetted onto wet soil surface carefully in each subsection. The pots were covered with a transparent plastic cover and plants were grown at 23/18 °C in the growth chamber with a 10h light/14h dark cycle at 350 μmol m-2s-1 and 70% relative humidity. Half Strength Hoagland Solution was applied and watered from below once per week before the beginning of the salt treatment. At 14 DAS, the flats were thinned to 1 seedling per subsection.Seeds were sown directly on soil in 26 × 26 × 6 cm flat pot filled with standard planting medium (Baccto, Houston, TX, USA). Each flat pot was divided into 36 subsections and 5 seeds were pipetted onto wet soil surface carefully in each subsection. The pots were covered with a transparent plastic cover and plants were grown at 23/18 °C in the growth chamber with a 10h light/14h dark cycle at 350 μmol m-2s-1 and 70% relative humidity. Half Strength Hoagland Solution was applied and watered from below once per week before the beginning of the salt treatment. At 14 DAS, the flats were thinned to 1 seedling per subsection.Seeds were sown directly on soil in 26 × 26 × 6 cm flat pot filled with standard planting medium (Baccto, Houston, TX, USA). Each flat pot was divided into 36 subsections and 5 seeds were pipetted onto wet soil surface carefully in each subsection. The pots were covered with a transparent plastic cover and plants were grown at 23/18 °C in the growth chamber with a 10h light/14h dark cycle at 350 μmol m-2s-1 and 70% relative humidity. Half Strength Hoagland Solution was applied and watered from below once per week before the beginning of the salt treatment. At 14 DAS, the flats were thinned to 1 seedling per subsection.Seeds were sown directly on soil in 26 × 26 × 6 cm flat pot filled with standard planting medium (Baccto, Houston, TX, USA). Each flat pot was divided into 36 subsections and 5 seeds were pipetted onto wet soil surface carefully in each subsection. The pots were covered with a transparent plastic cover and plants were grown at 23/18 °C in the growth chamber with a 10h light/14h dark cycle at 350 μmol m-2s-1 and 70% relative humidity. Half Strength Hoagland Solution was applied and watered from below once per week before the beginning of the salt treatment. At 14 DAS, the flats were thinned to 1 seedling per subsection.Seeds were sown directly on soil in 26 × 26 × 6 cm flat pot filled with standard planting medium (Baccto, Houston, TX, USA). Each flat pot was divided into 36 subsections and 5 seeds were pipetted onto wet soil surface carefully in each subsection. The pots were covered with a transparent plastic cover and plants were grown at 23/18 °C in the growth chamber with a 10h light/14h dark cycle at 350 μmol m-2s-1 and 70% relative humidity. Half Strength Hoagland Solution was applied and watered from below once per week before the beginning of the salt treatment. At 14 DAS, the flats were thinned to 1 seedling per subsection.Seeds were sown directly on soil in 26 × 26 × 6 cm flat pot filled with standard planting medium (Baccto, Houston, TX, USA). Each flat pot was divided into 36 subsections and 5 seeds were pipetted onto wet soil surface carefully in each subsection. The pots were covered with a transparent plastic cover and plants were grown at 23/18 °C in the growth chamber with a 10h light/14h dark cycle at 350 μmol m-2s-1 and 70% relative humidity. Half Strength Hoagland Solution was applied and watered from below once per week before the beginning of the salt treatment. At 14 DAS, the flats were thinned to 1 seedling per subsection.Seeds were sown directly on soil in 26 × 26 × 6 cm flat pot filled with standard planting medium (Baccto, Houston, TX, USA). Each flat pot was divided into 36 subsections and 5 seeds were pipetted onto wet soil surface carefully in each subsection. The pots were covered with a transparent plastic cover and plants were grown at 23/18 °C in the growth chamber with a 10h light/14h dark cycle at 350 μmol m-2s-1 and 70% relative humidity. Half Strength Hoagland Solution was applied and watered from below once per week before the beginning of the salt treatment. At 14 DAS, the flats were thinned to 1 seedling per subsection.Seeds were sown directly on soil in 26 × 26 × 6 cm flat pot filled with standard planting medium (Baccto, Houston, TX, USA). Each flat pot was divided into 36 subsections and 5 seeds were pipetted onto wet soil surface carefully in each subsection. The pots were covered with a transparent plastic cover and plants were grown at 23/18 °C in the growth chamber with a 10h light/14h dark cycle at 350 μmol m-2s-1 and 70% relative humidity. Half Strength Hoagland Solution was applied and watered from below once per week before the beginning of the salt treatment. At 14 DAS, the flats were thinned to 1 seedling per subsection.Seeds were sown directly on soil in 26 × 26 × 6 cm flat pot filled with standard planting medium (Baccto, Houston, TX, USA). Each flat pot was divided into 36 subsections and 5 seeds were pipetted onto wet soil surface carefully in each subsection. The pots were covered with a transparent plastic cover and plants were grown at 23/18 °C in the growth chamber with a 10h light/14h dark cycle at 350 μmol m-2s-1 and 70% relative humidity. Half Strength Hoagland Solution was applied and watered from below once per week before the beginning of the salt treatment. At 14 DAS, the flats were thinned to 1 seedling per subsection.Seeds were sown directly on soil in 26 × 26 × 6 cm flat pot filled with standard planting medium (Baccto, Houston, TX, USA). Each flat pot was divided into 36 subsections and 5 seeds were pipetted onto wet soil surface carefully in each subsection. The pots were covered with a transparent plastic cover and plants were grown at 23/18 °C in the growth chamber with a 10h light/14h dark cycle at 350 μmol m-2s-1 and 70% relative humidity. Half Strength Hoagland Solution was applied and watered from below once per week before the beginning of the salt treatment. At 14 DAS, the flats were thinned to 1 seedling per subsection.Seeds were sown directly on soil in 26 × 26 × 6 cm flat pot filled with standard planting medium (Baccto, Houston, TX, USA). Each flat pot was divided into 36 subsections and 5 seeds were pipetted onto wet soil surface carefully in each subsection. The pots were covered with a transparent plastic cover and plants were grown at 23/18 °C in the growth chamber with a 10h light/14h dark cycle at 350 μmol m-2s-1 and 70% relative humidity. Half Strength Hoagland Solution was applied and watered from below once per week before the beginning of the salt treatment. At 14 DAS, the flats were thinned to 1 seedling per subsection.
Sample_molecule_ch1total RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNA
Sample_extract_protocol_ch1Total RNA was extracted and purified using QIAGEN-RNeasy Mini Kit according to guidelines specified by the manufacturer.Total RNA was extracted and purified using QIAGEN-RNeasy Mini Kit according to guidelines specified by the manufacturer.Total RNA was extracted and purified using QIAGEN-RNeasy Mini Kit according to guidelines specified by the manufacturer.Total RNA was extracted and purified using QIAGEN-RNeasy Mini Kit according to guidelines specified by the manufacturer.Total RNA was extracted and purified using QIAGEN-RNeasy Mini Kit according to guidelines specified by the manufacturer.Total RNA was extracted and purified using QIAGEN-RNeasy Mini Kit according to guidelines specified by the manufacturer.Total RNA was extracted and purified using QIAGEN-RNeasy Mini Kit according to guidelines specified by the manufacturer.Total RNA was extracted and purified using QIAGEN-RNeasy Mini Kit according to guidelines specified by the manufacturer.Total RNA was extracted and purified using QIAGEN-RNeasy Mini Kit according to guidelines specified by the manufacturer.Total RNA was extracted and purified using QIAGEN-RNeasy Mini Kit according to guidelines specified by the manufacturer.Total RNA was extracted and purified using QIAGEN-RNeasy Mini Kit according to guidelines specified by the manufacturer.Total RNA was extracted and purified using QIAGEN-RNeasy Mini Kit according to guidelines specified by the manufacturer.
Sample_label_ch1biotinbiotinbiotinbiotinbiotinbiotinbiotinbiotinbiotinbiotinbiotinbiotin
Sample_label_protocol_ch1Ten µg of total RNA was processed to produce biotinylated cRNA targets.Ten µg of total RNA was processed to produce biotinylated cRNA targets.Ten µg of total RNA was processed to produce biotinylated cRNA targets.Ten µg of total RNA was processed to produce biotinylated cRNA targets.Ten µg of total RNA was processed to produce biotinylated cRNA targets.Ten µg of total RNA was processed to produce biotinylated cRNA targets.Ten µg of total RNA was processed to produce biotinylated cRNA targets.Ten µg of total RNA was processed to produce biotinylated cRNA targets.Ten µg of total RNA was processed to produce biotinylated cRNA targets.Ten µg of total RNA was processed to produce biotinylated cRNA targets.Ten µg of total RNA was processed to produce biotinylated cRNA targets.Ten µg of total RNA was processed to produce biotinylated cRNA targets.
Sample_taxid_ch1370237023702370237023702370237023702370237023702
Sample_hyb_protocolstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix procedures
Sample_scan_protocolstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix procedures
Sample_platform_idGPL198GPL198GPL198GPL198GPL198GPL198GPL198GPL198GPL198GPL198GPL198GPL198
Sample_relationReanalyzed by: GSM664643Reanalyzed by: GSM664644Reanalyzed by: GSM664647Reanalyzed by: GSM664648Reanalysis of: GSM455426Reanalysis of: GSM455427Reanalysis of: GSM455428Reanalysis of: GSM455429Reanalyzed by: GSM664659Reanalyzed by: GSM664660Reanalyzed by: GSM664663Reanalyzed by: GSM664664