Information about Samples:
Sample_titlega-1 (SALK_109115) mock treated for 1 hr, replicate 1ga-1 (SALK_109115) mock treated for 1 hr, replicate 2ga-1 (SALK_109115) mock treated for 1 hr, replicate 3ga-1 (SALK_109115) treated for 1 hr with 100 uM GA3, replicate 1ga-1 (SALK_109115) treated for 1 hr with 100 uM GA3, replicate 2ga-1 (SALK_109115) treated for 1 hr with 100 uM GA3, replicate 3gid1a-1 gid1b-1 gid1c-2 mock treated for 1 hr, replicate 1gid1a-1 gid1b-1 gid1c-2 mock treated for 1 hr, replicate 2gid1a-1 gid1b-1 gid1c-2 mock treated for 1 hr, replicate 3gid1a-1 gid1b-1 gid1c-2 treated for 1 hr with 100 uM GA3, replicate 1gid1a-1 gid1b-1 gid1c-2 treated for 1 hr with 100 uM GA3, replicate 2gid1a-1 gid1b-1 gid1c-2 treated for 1 hr with 100 uM GA3, replicate 3
Sample_geo_accessionGSM177119GSM177120GSM177121GSM177122GSM177123GSM177124GSM177125GSM177126GSM177127GSM177128GSM177129GSM177130
Sample_typeRNARNARNARNARNARNARNARNARNARNARNARNA
Sample_channel_count111111111111
Sample_source_name_ch17 day old ga-1 (SALK_109115) mutant seedlings mock-treated for 1h7 day old ga-1 (SALK_109115) mutant seedlings mock-treated for 1h7 day old ga-1 (SALK_109115) mutant seedlings mock-treated for 1h7 day old ga-1 (SALK_109115) seedlings treated for 1h with 100µM GA37 day old ga-1 (SALK_109115) seedlings treated for 1h with 100µM GA37 day old ga-1 (SALK_109115) seedlings treated for 1h with 100µM GA37 day old gid1a-1 gid1b-1 gid1c-2 mutant seedlings mock-treated for 1h7 day old gid1a-1 gid1b-1 gid1c-2 mutant seedlings mock-treated for 1h7 day old gid1a-1 gid1b-1 gid1c-2 mutant seedlings mock-treated for 1h7 day old gid1a-1 gid1b-1 gid1c-2 seedlings treated for 1h with 100µM GA37 day old gid1a-1 gid1b-1 gid1c-2 seedlings treated for 1h with 100µM GA37 day old gid1a-1 gid1b-1 gid1c-2 seedlings treated for 1h with 100µM GA3
Sample_organism_ch1Arabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thalianaArabidopsis thaliana
Sample_characteristics_ch1ga-1 (SALK_109115) mutant, 7 day old seedlings, light grown, mock-treated for 1hga-1 (SALK_109115) mutant, 7 day old seedlings, light grown, mock-treated for 1hga-1 (SALK_109115) mutant, 7 day old seedlings, light grown, mock-treated for 1hga-1 (SALK_109115) mutant, 7 day old seedlings, light grown, treated for 1h with 100µM GA3ga-1 (SALK_109115) mutant, 7 day old seedlings, light grown, treated for 1h with 100µM GA3ga-1 (SALK_109115) mutant, 7 day old seedlings, light grown, treated for 1h with 100µM GA3gid1a-1 gid1b-1 gid1c-2 mutant, 7 day old seedlings, light grown, mock-treated for 1hgid1a-1 gid1b-1 gid1c-2 mutant, 7 day old seedlings, light grown, mock-treated for 1hgid1a-1 gid1b-1 gid1c-2 mutant, 7 day old seedlings, light grown, mock-treated for 1hgid1a-1 gid1b-1 gid1c-2 mutant, 7 day old seedlings, light grown, treated for 1h with 100µM GA3gid1a-1 gid1b-1 gid1c-2 mutant, 7 day old seedlings, light grown, treated for 1h with 100µM GA3gid1a-1 gid1b-1 gid1c-2 mutant, 7 day old seedlings, light grown, treated for 1h with 100µM GA3
Sample_molecule_ch1total RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNAtotal RNA
Sample_extract_protocol_ch1Approximately 80 mg from 7 day old, light grown ga-1 (SALK_109115) mutant seedlings were mock-treated for 1h, collected and ground to a fine powder under liquid Nitrogen. Samples were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).Approximately 80 mg from 7 day old, light grown ga-1 (SALK_109115) mutant seedlings were mock-treated for 1h, collected and ground to a fine powder under liquid Nitrogen. Samples were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).Approximately 80 mg from 7 day old, light grown ga-1 (SALK_109115) mutant seedlings were mock-treated for 1h, collected and ground to a fine powder under liquid Nitrogen. Samples were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).Approximately 80 mg from 7 day old light grown ga-1 (SALK_109115) mutant seedlings were treated with 100µM GA3 for 1h, collected and ground to a fine powder under liquid Nitrogen. Samples were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).Approximately 80 mg from 7 day old light grown ga-1 (SALK_109115) mutant seedlings were treated with 100µM GA3 for 1h, collected and ground to a fine powder under liquid Nitrogen. Samples were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).Approximately 80 mg from 7 day old light grown ga-1 (SALK_109115) mutant seedlings were treated with 100µM GA3 for 1h, collected and ground to a fine powder under liquid Nitrogen. Samples were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).Approximately 80 mg from 7 day old, light grown gid1a-1 gid1b-1 gid1c-2 mutant seedlings were mock-treated for 1h, collected and ground to a fine powder under liquid Nitrogen. Samples were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).Approximately 80 mg from 7 day old, light grown gid1a-1 gid1b-1 gid1c-2 mutant seedlings were mock-treated for 1h, collected and ground to a fine powder under liquid Nitrogen. Samples were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).Approximately 80 mg from 7 day old, light grown gid1a-1 gid1b-1 gid1c-2 mutant seedlings were mock-treated for 1h, collected and ground to a fine powder under liquid Nitrogen. Samples were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).Approximately 80 mg from 7 day old light grown gid1a-1 gid1b-1 gid1c-2 mutant seedlings were treated with 100µM GA3 for 1h, collected and ground to a fine powder under liquid Nitrogen. Samples were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).Approximately 80 mg from 7 day old light grown gid1a-1 gid1b-1 gid1c-2 mutant seedlings were treated with 100µM GA3 for 1h, collected and ground to a fine powder under liquid Nitrogen. Samples were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).Approximately 80 mg from 7 day old light grown gid1a-1 gid1b-1 gid1c-2 mutant seedlings were treated with 100µM GA3 for 1h, collected and ground to a fine powder under liquid Nitrogen. Samples were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Sample_label_ch1biotinbiotinbiotinbiotinbiotinbiotinbiotinbiotinbiotinbiotinbiotinbiotin
Sample_label_protocol_ch1Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets using the MessageAmp™ II-Biotin Enhanced Single Round aRNA Amplification Kit (Ambion) according to the manufacturer's instructions.Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets using the MessageAmp™ II-Biotin Enhanced Single Round aRNA Amplification Kit (Ambion) according to the manufacturer's instructions.Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets using the MessageAmp™ II-Biotin Enhanced Single Round aRNA Amplification Kit (Ambion) according to the manufacturer's instructions.Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets using the MessageAmp™ II-Biotin Enhanced Single Round aRNA Amplification Kit (Ambion) according to the manufacturer's instructions.Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets using the MessageAmp™ II-Biotin Enhanced Single Round aRNA Amplification Kit (Ambion) according to the manufacturer's instructions.Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets using the MessageAmp™ II-Biotin Enhanced Single Round aRNA Amplification Kit (Ambion) according to the manufacturer's instructions.Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets using the MessageAmp™ II-Biotin Enhanced Single Round aRNA Amplification Kit (Ambion) according to the manufacturer's instructions.Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets using the MessageAmp™ II-Biotin Enhanced Single Round aRNA Amplification Kit (Ambion) according to the manufacturer's instructions.Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets using the MessageAmp™ II-Biotin Enhanced Single Round aRNA Amplification Kit (Ambion) according to the manufacturer's instructions.Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets using the MessageAmp™ II-Biotin Enhanced Single Round aRNA Amplification Kit (Ambion) according to the manufacturer's instructions.Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets using the MessageAmp™ II-Biotin Enhanced Single Round aRNA Amplification Kit (Ambion) according to the manufacturer's instructions.Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets using the MessageAmp™ II-Biotin Enhanced Single Round aRNA Amplification Kit (Ambion) according to the manufacturer's instructions.
Sample_taxid_ch1370237023702370237023702370237023702370237023702
Sample_hyb_protocolstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix procedures
Sample_scan_protocolstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix proceduresstandard Affymetrix procedures
Sample_platform_idGPL198GPL198GPL198GPL198GPL198GPL198GPL198GPL198GPL198GPL198GPL198GPL198